API reference

Transport

Core 1D reactive transport system objects and solver helpers.

System	Represents a 1D reactive transport system.
Cells	Represents the spatial discretization of a 1D domain into cells.
Advection	Handles advection terms in the 1D transport equation using TVD schemes.
Dispersion	Handles dispersion and diffusion terms in the transport equation.
FixedConcentrationBoundary	Boundary condition with fixed concentration at the domain boundary.
make_solver	Create a JIT-compiled solver function for reactive transport simulations.
user_system_parameters	Decorate system parameter classes with spatial awareness.

Species

Species declarations and species container utilities.

declare_species

Declare chemical species for reactive transport models.

Reactions

Kinetic reaction interfaces and spatial parameter helpers.

KineticReaction	Abstract base class for kinetic reactions in reactive transport.
reaction	Decorate a class to create spatially-aware reaction classes.
SpatiallyConst	Marker for parameters that are constant across the domain.
SpatiallyVarying	Marker for parameters that vary spatially in the domain.